Whenever you jump on subsonic it gives a message
"Warning! The subsonic process is running as root. Please consider changing this"
Should it be fine keeping it like that or is there something I have to do to make it switch to run under my main user.
It seems to only be a disclaimer. Since you are the master user on the server and in most cases, the only user... this message can safely be ignored. However, I will look into here soon as per firing subsonic as the user and not as subsonic/root itself.