I ran the upgrade as you wrote here:https://quickbox.io/ufaqs/how-do-i-update-to-quickbox-on-github/
After that I ran the updater from the dashboard.
When I entered the rutorrent I found out the theme was change to the standard one. I don't know if the settings was also changed. Can you please look into this?
You should have kept on reading a few posts below!
..and to add to this.. the theme within ruTorrent can be changed from the settings menu (the cog wheel). From there, you will see a dropdown with a list of themes to choose from.