Disabling HTTPS redirect


At the moment I have setup a test site for a project I would like to host on the quick box server for some time, I have that all up and running using virtual hosts but I would like to encrypt it via https.
The problem is, I currently have the quickbox using SSL on two lets encrypt certificates, one using the automated installer(Which I would now like to use for the project) and another one which I enabled via editing the default SSL conf in the sites-enabled folder.
Could anyone advise on how to stop quick box hijacking the https requests for the first domain I installed via the automated installer and then redirect that to my virtual host ?